Publications

Articles and other material published by the MCL Consortium.
Name Pubmed ID Journal Year
A hybrid agent-based model of the developing mammary terminal end bud. 27475843 Journal of theoretical biology 2016
A Novel Pathway-Based Approach Improves Lung Cancer Risk Prediction Using Germline Genetic Variations. 27222311 Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2016
AIM1 is an actin-binding protein that suppresses cell migration and micrometastatic dissemination. 28747635 Nature communications 2017
Altered hydroxymethylation is seen at regulatory regions in pancreatic cancer and regulates oncogenic pathways. 28986391 Genome research 2017
Boolean analysis identifies CD38 as a biomarker of aggressive localized prostate cancer. 29464091 Oncotarget 2018
CancerLocator: non-invasive cancer diagnosis and tissue-of-origin prediction using methylation profiles of cell-free DNA. 28335812 Genome biology 2017
Characterizing the immune microenvironment in high-risk ductal carcinoma in situ of the breast. 27785654 Breast cancer research and treatment 2016
Co-expression modules identified from published immune signatures reveal five distinct immune subtypes in breast cancer. 27815749 Breast cancer research and treatment 2016
Combined circulating tumor DNA and protein biomarker-based liquid biopsy for the earlier detection of pancreatic cancers. 28874546 Proceedings of the National Academy of Sciences of the United States of America 2017
Computer Simulation, Visualization, and Image Processing of Cancer Data and Processes. 26798209 Cancer informatics 2016
Detection of ductal carcinoma in situ and subsequent interval cancers. 26834245 BMJ (Clinical research ed.) 2016
Diagnosis of prostate cancer by desorption electrospray ionization mass spectrometric imaging of small metabolites and lipids. 28292895 Proceedings of the National Academy of Sciences of the United States of America 2017
Editorial: Special Section on Multiscale Cancer Modeling. 28824199 IEEE transactions on bio-medical engineering 2017
Exact and Approximate Statistical Inference for Nonlinear Regression and the Estimating Equation Approach. 29033489 Scandinavian journal of statistics, theory and applications 2017
Genetics and biology of pancreatic ductal adenocarcinoma. 26883357 Genes & development 2016
Genome-wide DNA methylation measurements in prostate tissues uncovers novel prostate cancer diagnostic biomarkers 28412973 BMC cancer 2017
Global Protease Activity Profiling Provides Differential Diagnosis of Pancreatic Cysts. 28424202 Clinical cancer research : an official journal of the American Association for Cancer Research 2017
High prevalence of mutant KRAS in circulating exosome-derived DNA from early-stage pancreatic cancer patients. 28104621 Annals of oncology : official journal of the European Society for Medical Oncology 2017
Imaging-based biomarkers: Changes in the tumor interface of pancreatic ductal adenocarcinoma on computed tomography scans 29370450 Cancer 2018
Immune DNA signature of T-cell infiltration in breast tumor exomes. 27452728 Scientific reports 2016
Integrated digital error suppression for improved detection of circulating tumor DNA. 27018799 Nature biotechnology 2016
Intranuclear and higher-order chromatin organization of the major histone gene cluster in breast cancer. 28504305 Journal of cellular physiology 2017
Loss of Expression of AZGP1 Is Associated With Worse Clinical Outcomes in a Multi-Institutional Radical Prostatectomy Cohort. 27325561 The Prostate 2016
Minimally invasive genomic and transcriptomic profiling of visceral cancers by next-generation sequencing 26681674 Annals of oncology : official journal of the European Society for Medical Oncology 2015
Mitotically-Associated lncRNA (MANCR) Affects Genomic Stability and Cell Division in Aggressive Breast Cancer. 29378907 Molecular cancer research : MCR 2018
MUC1 Expression by Immunohistochemistry Is Associated with Adverse Pathologic Features in Prostate Cancer 27846218 PloS one 2016
MYC drives overexpression of telomerase RNA (hTR/TERC) in prostate cancer. 28888037 The Journal of pathology 2017
Oligometastatic prostate cancer: definitions, clinical outcomes, and treatment considerations. 27725639 Nature reviews. Urology 2016
Opportunities and Challenges for Environmental Exposure Assessment in Population-Based Studies. 28710076 Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2017
Pathobiology of the 129:Stat1 -/- mouse model of human age-related ER-positive breast cancer with an immune infiltrate-excluded phenotype. 28865492 Breast cancer research : BCR 2017
Phase I Trial of Intratumoral Injection of CCL21 Gene-Modified Dendritic Cells in Lung Cancer 28468947 Clinical cancer research : an official journal of the American Association for Cancer Research 2017
Quantitative imaging to evaluate malignant potential of IPMNs. 27588410 Oncotarget 2016
Radiological Image Traits Predictive of Cancer Status in Pulmonary Nodules. 27663588 Clinical cancer research : an official journal of the American Association for Cancer Research 2016
Selective expression of long non-coding RNAs in a breast cancer cell progression model. 28488769 Journal of cellular physiology 2017
Single cell analysis of human tissues and solid tumors with mass cytometry. 27598832 Cytometry. Part B, Clinical cytometry 2016
Spatial computation of intratumoral T cells correlates with survival of patients with pancreatic cancer. 28447602 Nature communications 2017
The OncoArray Consortium: A Network for Understanding the Genetic Architecture of Common Cancers. 27697780 Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2016
The role of imaging in the clinical practice of radiation oncology for pancreatic cancer. 29110053 Abdominal radiology (New York) 2018
tsRNA signatures in cancer. 28696308 Proceedings of the National Academy of Sciences of the United States of America 2017
Unsupervised gene set testing based on random matrix theory. 27809777 BMC bioinformatics 2016
Use of Molecular Tools to Identify Patients With Indolent Breast Cancers With Ultralow Risk Over 2 Decades. 28662222 JAMA oncology 2017
Use of the Prostate Health Index for detection of prostate cancer: results from a large academic practice. 28117387 Prostate cancer and prostatic diseases 2017